| Moving from "One Drug Fits All" to Personalized Therapy The 20th century has brought us a broad arsenal of therapies
against all major diseases: infections, cardiovascular disease, neoplastic
disease, and mental disorders. However, drug therapy often fails to be curative
and may in fact cause substantial adverse effects. Moreover, worldwide use of
these drugs has revealed substantial interindividual differences in therapeutic
response. Any given drug can be therapeutic in some individuals but ineffective
in others, and some individuals experience adverse drug effects whereas others
are unaffected. Often, distinct molecular mechanisms underlie therapeutic and
adverse effects. Recognition of interindividual differences in drug response is
an essential step towards optimizing therapy. Over the past decades, much
evidence has emerged indicating that a substantial portion of variability in
drug response is genetically determined, with age, nutrition, health status,
environmental exposure, and concurrent therapy playing important contributory
roles. To achieve individual drug therapy with a reasonably predictive outcome,
one must further account for different patterns of drug response among
geographically and ethnically distinct populations. These observations of highly variable drug response, which began
in the early 1950s, led to the birth of a new scientific discipline arising from
the confluence of genetics, biochemistry, and pharmacology. Called
pharmacogenetics, it focuses on drug response as a function of genetic
differences among individuals. Applied to nontherapeutic foreign substances
(xenobiotics), the equivalent term "toxicogenetics" is used. Pharmacogenomics (or toxicogenomics) as a recently emerged
discipline stems from the fusion of pharmacogenetics (or toxicogenomics) with
genomics. Enabled by high-throughput technologies in DNA analysis, genomics
introduces a further dimension to individualized predictive medicine.
Determining an individual's unique genetic profile in respect to disease risk
and drug response will have a profound impact on understanding the pathogenesis
of disease, and it may enable truly personalized therapy. We can highlight this
concept as "therapy with the right drug at the right dose in the right patient."
Its urgency emerged in a recent survey of studies on adverse drug effects in
hospitalized patients: adverse drug reactions may rank as the fifth leading
cause of death in the United States1. Thus, we
anticipate that pharmacogenomics will play an integral role in disease
assessment, drug discovery and development, and selection of the type of drug.
Moreover, it may provide information useful to the selection of dosage regimen
for an individual patient. Medicine, as we move into the third millennium, still targets
therapy to the broadest patient population that might possibly benefit from it,
and it relies on statistical analysis of this population's response for
predicting therapeutic outcome in individual patients. Therapists of necessity
make decisions about the choice of drug and appropriate dosage based on
information derived from population averages. This "one drug fits all" approach
could, with the fruits of pharmacogenomic research, evolve into an
individualized approach to therapy where optimally effective drugs are matched
to a patient's unique genetic profile2. This involves
classifying patients with the same phenotypic disease profile into smaller
subpopulations, defined by genetic variations associated with disease, drug
response, or both. The assumption underlying this approach is that drug therapy
in genetically defined subpopulations can be more efficacious and less toxic
than in a broad population. Individualizing drug therapy raises a number of issues with
enormous practical consequences. Currently, the pharmaceutical industry is in a
consolidation and merger phase, with ever larger corporations emerging at a
steady pace. This consolidation is done in the expectation that many novel drugs
can be brought to market with high efficacy against major diseases, driven by
genomics-based drug discovery. Indeed, large corporations depend on generating
"blockbuster" drugs-;drugs that raise in excess of a billion dollars in revenue
each year by targeting large patient populations. However, it remains to be seen
whether betting on a "one drug fits all" approach is realistic. Certainly, a few
blockbuster drugs continue to emerge, for example, the Cox-2 selective
inhibitors in the therapy of inflammatory joint diseases. Efficacy does not
appear to exceed substantially that of traditional nonsteroidal antiinflammatory
drugs (NSAIDs), which inhibit both Cox-1 and Cox-2 to varying degrees; however,
the incidence of gastrointestinal lesions is reduced. Yet, only a portion of
patients receiving conventional NSAIDs develop these lesions, and the
traditional drugs are much less expensive. Moreover, it remains to be seen what
long-term sequelae arise from treatment with Cox-2 selective inhibitors. These
sequelae might be beneficial (for example, the possible prevention of colon
cancer or neurodegenerative disorders associated with inflammation in the CNS),
but the physiological functions of Cox-2 remain poorly understood. Trials over
longer time periods will be needed to address these questions fully. As three
quarters of all health care costs are used for the treatment of chronic illness,
mostly of the aged, long-term issues will be the battleground where optimal
therapies will be decided. Whether a single drug emerges superior to others in a broad
patient population or whether best clinical response requires differential
therapy of small subpopulations is the subject of fierce debates. Bringing a new
drug to the market currently costs approximately $500 million, making it
economically impossible to target small patient populations. If smaller patient
populations are to be served, we need to change the entire process, up to final
regulatory agency approval for clinical use. Conceivably, targeting well-defined
patient populations will sharpen our analysis of risk/benefit ratios and permit
clinical trials to be substantially reduced in size. Laws and FDA regulations
may have to be changed to accommodate the need for targeting patients with rare
diseases or with subtypes of otherwise common diseases. This approach will set
the stage for testing whether targeting small patient populations with select
drugs is superior to treating many patients with the best drug available for a
given disease. The outcome may vary from one case to another. Thus, individualizing drug therapy with the use of
pharmacogenomics holds the potential to revolutionize medical therapeutics, by
challenging the "one drug fits all" approach. Furthermore, pharmacogenomics
could also enhance the value of currently approved drugs with limited market
share because of significant toxicity or limited efficacy, enabling prescribers
to identify patients for whom they will be both effective and safe. Historical Perspective: PharmacogeneticsBiologists have long accepted that the capacity of organisms to
respond differently to their environment is genetically determined3. Investigations into human physiology and chemistry
during the mid-19th century, accelerated by the emergence of organic chemistry,
established that ingested chemicals are excreted in a different form. These
early metabolic studies fell into the period between the discovery of the laws
of genetics by Gregor Mendel in 1865 and their rediscovery around the turn of
the century. Two separate investigators, Lucien Cuenot, working with coat
colors in mice, and his contemporary, Archibald Garrod, studying alcaptonuria in
humans, anticipated the connection between enzymes and genes. Garrod's work on
alcaptonuria in 1902 constituted the first proof of Mendelian genetics in
humans. As a result of these studies, he advanced the hypothesis that
genetically determined differences in biochemical processes could be the cause
of adverse reactions after the ingestion of drugs4.
Remarkably, Garrod went as far as to suggest that enzymes were implicated in the
detoxification of foreign substances, and that such a mechanism might fail in
some persons for lack of the required detoxifying enzyme4. These studies on alkaptonuria are the basis for the
development of biochemical genetics and biochemical pharmacology. Moreover, this
research presaged our current concept of genetically controlled interindividual
variation in the response to foreign substances. The first complete report of an inherited difference in the
response to a foreign chemical or xenobiotic described inability to taste
phenylthiocarbamide (PTC). In 1932, Snyder demonstrated that this "taste
blindness" was inherited as an autosomal recessive Mendelian trait5. This and other defects in sensory perception related to
xenobiotic exposure were the first known examples of genetic polymorphism, a
concept introduced some years later by Ford6. The
molecular basis of "taste blindness" to PTC has never been confirmed, but the
report is widely regarded as the first example of a pharmacogenetic study7. Garrod's original hypothesis was buttressed when it was noticed
during World War II that "primaquine hemolysis" was much more common among
African-American soldiers in the United States Army who were taking the
antimalarial primaquine8. Subsequent study in the
postwar period revealed that the cause of this drug-induced hemolysis was a
genetic deficiency of glucose-6-phosphate dehydrogenase (G-6-PD)9. Evidence of interindividual variations in the response to
suxamethonium (succinylcholine), isoniazid, and debrisoquine was also
scrutinized for a genetic connection. Clinical reports first surfaced in the
late 1940s of peripheral neuropathy occurring in a substantial number of
patients treated with the antituberculosis drug isoniazid10. These initial clinical observations were followed by the realization that slow metabolizers (acetylators),
although frequencies varied, followed defined geographic and ethnic population
distributions11. We now know that the "slow
acetylator phenotype" represents approximately 40% to 60% of Caucasians and
results in slow clearance and the potential for associated toxicity from drugs
such as isoniazid, procainamide, and phenelzine12.
Initial clinical trials of suxamethonium in small numbers of patients gave no
indication of complications or toxicity. However alarming reports of prolonged
apnea following clinical doses of suxamethonium appeared in large-scale trials
of the new muscle relaxant. Subsequent investigation suggested that a deficiency
in the metabolizing enzyme (pseudocholinesterase), possibly of hereditary
origin, was responsible. These person-to-person variations in response to
primaquine, followed by isoniazid and suxamethonium, were the first to be
studied from a genetic perspective. Following in the wake of these initial
observations, Arno Motulsky proposed in 1957 that the inheritance of acquired
traits might explain many individual differences, both in the efficacy of drugs
and in the occurrence of adverse drug reactions13.
A serendipitous observation by physicians at St. Mary's Hospital
Medical School in London (that a volunteer's severe hypotensive response in a
clinical trial with debrisoquine was due to impaired oxidative metabolism) led
to the identification of yet another important, genetically determined variation
in drug response. At the same time, German physicians independently observed
greatly exaggerated adverse drug effects in some patients administered the
alkaloid sparteine, which has antiarrhythmic properties. This reaction was also
attributed to decreased oxidative metabolism14.
Family studies revealed that the metabolism of both drugs is under monogenic
control and that poor metabolizers are homozygous for a recessive allele of
cytochrome P450, now termed CYP2D6, or debrisoquine 4-hydroxylase. These observations and the subsequent research inspired by them
have helped to lay the foundation for pharmacogenetics. Today, many examples of
variability in both drug response and toxicity associated with known genetic
variability are documented (Table 1). In a few cases, genetic tests are beginning to find their way into
clinical practice, making a proactive approach to individualized therapy
possible. In cancer chemotherapy of acute lymphocytic leukemia, administration
of drugs such as 6-mercaptopurine , 6-thioguanine, and azathioprine can cause
severe hematologic toxicity or even death in patients possessing nonfunctional
("null") variants of thiopurine methyltransferase (TPMT). Functional assays of
TPMT in red blood cells, or alternatively genotyping, can identify those
patients (approximately 1 in 300) who are homozygous for alleles encoding
nonfunctional enzyme, and therefore unable to metabolize the drugs to their
inactive methylated forms. These patients can be safely treated with doses 10 to
15 times less than commonly prescribed15,16. Therefore, genotyping, or functional enzyme analysis, has become standard practice in major cancer treatment centers such as the Mayo
Clinic (Rochester, MN) and St. Jude's Children Research Hospital (Memphis, TN).
Pharmacogenetics applies not only to traditional drugs but also
to bioengineered proteins and gene therapy. Human genetic variability can be
expected to affect all treatment modalities. For example, breast cancer
treatment with trastuzumab (Herceptin), a humanized monoclonal antibody against
the HER2 receptor developed by Genentech, Inc., is linked to HER2
overexpression. This reaction correlates with poor clinical prognosis and serves
as a marker for responsiveness to trastuzumab therapy, either alone or in
combination with chemotherapy17,18. Cytochrome P450The cytochrome P450 monooxygenase system of enzymes is
responsible for a major portion of drug metabolism in humans. Although commonly
serving to detoxify xenobiotics, these enzymes are also principally responsible
for the activation of procarcinogens and promutagens in the human body. This
scenario is particularly important for lipophilic drugs such as CNS-active
drugs, which generally must be lipophilic to penetrate the blood-brain barrier.
Because renal excretion is minimal for these compounds, P450 metabolism provides
the primary means of drug elimination. This large family of genes has been
intensely studied, and among the numerous P450 subtypes, CYP2D6, 3A4/3A5, 1A2,
2E1, 2C9, and 2C19 play particularly critical roles in genetically determined
responses to a broad spectrum of drugs. Patients who are homozygous for the CYP2D6 null alleles exhibit
a poor metabolizer phenotype, with impaired degradation and excretion of many
drugs, including debrisoquine, metoprolol, nortriptyline, and propafone19. These poor metabolizers are more likely to exhibit
adverse drug reactions. The frequency of this recessive trait ranges from 1% to
2% in Asians, to approximately 5% in African Americans, to 6% to 10% in
Caucasian populations20. More than 40 drugs used in
clinical practice, especially in the areas of cardiovascular disease21 and psychiatric disorders22,
have now been identified for which metabolism follows the same pattern as
debrisoquine and sparteine. Determination of a patient's CYP2D6
phenotype/genotype may prove useful in treatment with antipsychotic drugs23, while comprehensive genotyping assays for all relevant P450 isotypes and their main sequence variants are being developed. Similarly, patients who are homozygous for the "null" allele of
the P450 isoform CYP2C19 are highly sensitive to omeprazole, diazepam,
propranolol, mephenytoin, amitriptyline, hexobarbital and other drugs19. The CYP2C19 poor metabolizer phenotype comprises 2% to
5% of Caucasians and 3% to 23% of Asians, resulting largely from a single base
pair mutation (A→G) in exon 5 of the coding region 7. The truncated mutant protein lacks
the heme-binding region and is enzymatically inert24.
Another polymorphically expressed member of the cytochrome P450
family, CYP2C9, metabolizes a range of therapeutically important drugs such as
ibuprofen, naproxen, piroxicam, tetrahydrocannabinol, phenytoin, tolbutamide,
and S-warfarin25. A number of these substrates have
narrow therapeutic indices; therefore, this genetic variation has clinical
significance. Amino acid substitutions at codons 144 and 359 in the coding
region of CYP2C9 result in a 5-fold decline in metabolic activity.
Although the frequency of these 2 allelic variants is uncertain, approximately
25% of Caucasians appear to be heterozygous for one or the other variant,
leading to a predicted frequency of 5% for the homozygous genotype26. Including genotype effects in screening new drug candidates may
help to avoid potential adverse effects caused by such polymorphisms relevant to
drug action. Five years ago, 53% of surveyed pharmaceutical companies indicated
that they screen drug candidates during the lead discovery phase to determine
whether they are metabolized by P450 cytochromes for which significant
polymorphism is known to exist. The figure today approaches 80%27. Cytochrome P450s inactivate or in some cases activate
xenobiotics. Therefore, P450 polymorphisms affect an individual's susceptibility
to environmental toxins. As a result, sequence variation of P450 isotypes
attracts special attention in toxicogenetics. Recently the US National Institute
of Environmental Health Sciences launched the Environmental Genome Project with
the stated goal of understanding the genetic factors governing an individual's
response to the environment on a genome-wide scale. This effort parallels the
study of genetic variability in drug response28.
PharmacogenomicsPharmacogenomics is an emerging discipline critical for
assessing the genetic basis of drug response and toxicity in targeted patient
populations29. By broadening the search for genetic
factors affecting drug response, pharmacogenomics is beginning to supersede the
candidate gene approach typical of earlier pharmacogenetic studies.
Pharmacogenetics incorporates the disciplines of biochemistry and pharmacology
and seeks to correlate phenotypic biomarkers, such as drug induced toxicity,
with genetic characterization by association studies and twin studies in
patients. Pharmacogenomics, on the other hand, takes advantage of genomic
techniques such as high-throughput DNA sequencing, gene mapping, and
bioinformatics to allow researchers to identify the actual genetic basis of
interindividual and interracial variation in drug efficacy, metabolism, and
transport. Each drug after it enters the body interacts with numerous proteins,
such as carrier proteins, transporters, metabolizing enzymes, and multiple types
of receptors2,30,31. These proteins determine drug absorption, distribution, excretion, target site of action, and pharmacological response.
Moreover, drugs trigger downstream secondary events that may also vary among
patients. As a result, multiple polymorphisms in many genes may affect drug
response, requiring a genome-wide search for the responsible genes. Profiling the expression pattern of genes in a target tissue
reveals mechanisms of drug action in a genomic context, and it can serve to
clarify interindividual differences in drug response that are downstream of
immediate drug effects in the body. Analyzing the entire transcriptional program
of a tissue, for example, fibroblasts in response to serum stimulation32, has revealed unprecedented detail of a complex response. Tissue transcript profiling is especially appropriate in cancers with
inherent genetic instability because mRNA can be extracted from biopsies or
surgical samples. Altered gene expression in the tumor can serve as a guide for
selecting effective drug therapy or avoiding unnecessary exposure to toxic but
ineffective drugs (Table 1). The Human Genome Project (HGP) and advanced technology spin-offs
emanating from it will have a profound impact on drug discovery, development,
and therapy within the pharmaceutical industry33.
Innovative automated instrumentation, new analytical and informatics approaches,
and novel strategies emerging from genome-based research will be essential for
exploiting the massive primary sequence data. Technical innovations such as DNA
microarrays and microfluidic analytical devices are revolutionizing the
biological sciences by enabling economy of scale for high-throughput DNA
sequencing and gene mapping required for genomic research. DNA microarrays, although they can be assembled by one of
several methods, all have a common origin in the DNA blotting methods pioneered
by Southern in the early 1970s. The common elements of this approach to nucleic
acid analysis are an immobilized or tethered nucleic acid (DNA or RNA) species
that is hybridized with a second, solution-phase DNA or RNA species that is
generally labeled with a detectable molecule such as a fluorescent dye. The
sequence of the unknown "target" nucleic acid is determined by decoding its
complementarity with the nucleic acid "probe" of known sequence. Whether the
probe or target nucleic acid is immobilized varies among the different array
methods, but most commonly, the "probe" is tethered to a surface and the target
to be analyzed is in solution. Lab card or lab-on-a-chip devices are becoming increasingly
important in genomic analysis. Microcapillary electrophoresis separation devices
pioneered fewer than 10 years ago by Harrison, Ramsay, Mathies, and
others have virtually replaced traditional gel electrophoresis for
high-throughput sequencing34,35. Lab cards with complex networks of microcapillary
channels finer than human hair have now been demonstrated to be useful not only
for molecular separations but also to carry out nanoscale biochemical reactions.
Polymerase chain reactions, sequencing reactions, primer extension reactions,
and nuclease cleavage reactions carried out in these devices realize an order of
magnitude improvement in throughput and economy over microtitre plate-;based
biochemistry. Increasingly simple and inexpensive genetic testing systems based
on high-throughput DNA microarrays and microfluidic devices should eventually
allow patients to be prescreened for specific, relevant polymorphisms before
drug therapy is initiated36. Genomic techniques are making it possible not only to identify
tangible new gene targets for drug discovery efforts, but also to find
associations between specific genetic markers and drug response in a patient
population. An evolving key element in genome-wide searches for genes relevant
to disease and therapy is a comprehensive map of polymorphisms distributed over
the entire genome. Polymorphisms are generally defined as variations in DNA
sequence that occur in at least 1% of the population. The vast majority of
polymorphisms are single nucleotide polymorphisms, or SNPs (pronounced "snips").
Because the human genome contains 3 billion nucleotides, and variations between
individuals occur approximately once in each 300 base pairs, approximately 10
million SNPs are expected to exist between any 2 genomes. Because only a
fraction of these SNPs are likely to prove relevant to a drug response, the
ultimate goal will be to identify all functionally important variants, truly a
Herculean task. Major pharmaceutical firms have responded to the growing
emphasis on individualized therapy to improve drug efficacy and safety with
large investments in pharmacogenomics research (Table 2). It is becoming apparent that genetic testing to identify patients in whom a particular drug can be given
safely and effectively may provide those products with a competitive advantage.
Several of the world's largest pharmaceutical firms, including AstraZeneca,
Bayer, Pfizer, SmithKline Beecham, and Novartis have formed a consortium with 5
major academic centers with the goal of identifying 300,000 heritable SNPs
within the next 2 years37. The National Institutes of
Health, in an independent effort, has made $30 million available over 3 years,
starting in January of 1998, for the discovery and compilation of 100,000 SNPs37. To top this all, scientists at Celera Genomics contend that they will have a collection of 6 to 10 million SNPs by mid 2000.
With availability of high-resolution SNP maps and DNA microarray analytical
capability, performing genome-wide association studies during clinical trials
becomes feasible, enabling one to identify disease-susceptibility genes for
prognosis, drug discovery, and selection of therapy. If risk for a given disease
is predicted to be high, as judged by the SNP pattern of a patient, preventive
therapy and lifestyle adjustments (diet, exercise, etc) may be implemented. A
comprehensive SNP map will also contain genetic variants relevant to drug
transport, metabolism, and receptor interaction and, therefore, needs to be
considered in drug selection. Moreover, a comprehensive SNP map may also serve
to alert the therapist when careful drug dosage monitoring is required.
Stratifying patient populations using genome-wide SNP maps presents a major
challenge to the pharmaceutical industry. The outcome from applying such an
approach cannot be accurately gauged at present. Relevant websites with information on pharmacogenomic issues are
summarized in Table 3.
What Do We Learn From Pharmacogenomics About Future Potential and Limits of Drug Therapy?Genetic heterogeneity appears to be a significant source of
variability observed in the response to drugs. This variability means that
information pertaining to interethnic and interindividual genetic differences
can be used to facilitate rational drug discovery and development and to avoid
or minimize the incidence of adverse events in clinical trials. Thus, one could
generate criteria for selecting patients most likely to benefit from a drug
without incurring unnecessary risk. Early or preventive therapy guided by
genotyping could significantly enhance clinical outcome. The need for a new,
individualized approach to drug development and therapy is clear. Every year,
approximately 3.1 billion prescriptions are issued in the United States, of
which approximately 2.1 million result in an adverse reaction. One million
prescriptions from this latter group may result in hospitalization, and of these
more than 100,000 patients may die38. How can we reduce these severe adverse reactions by using
pharmacogenomics? Over the near term, patient genotyping prior to therapy in a
few but increasing number of instances will serve to avert or minimize severe
drug toxicity. Alternatively, drugs may be designed a priori so that they are
not subject to the differential metabolic patterns known to be caused by
polymorphic variation. Looking farther ahead, and on a much broader scale, the efficacy
of administered drugs may be improved, rather than avoiding toxicity as the main
objective, by distinguishing good responders from poor responders prior to
therapy. Often, effective drug response is limited to a portion of treated
patients, whereas the majority benefits little or not at all. Predicting which
patients are most likely to respond best to a particular drug, or which drug
will yield optimal effects for a given patient, would represent a significant
advance in therapy even with current drugs, let alone novel drugs developed with
these criteria in mind. The success of this approach depends in large part on
assembling an extensive, high-quality database of informative SNPs, a major
focus for genomics companies (Table
2). Ultimately the vision of pharmacogenomics encompasses a genetic profile
for each individual, containing sufficient information to select which drugs are
most likely to be safe and effective in that person. The same insight will serve
to prevent disease to begin with, arguably the most desirable goal. However, obstacles to the implementation of this vision are
formidable. The dynamic complexity of the human genome, multigenic disease
origins, and involvement of numerous genes in drug response impede the effective
application of genome-wide SNP scanning in the clinic. Drug responses will most
likely be associated with patterns of multiple polymorphically expressed traits,
rather than single causative polymorphisms. Such patterns of genetic variants
differ among distinct ethnic groups. This factor could obscure prediction of
disease susceptibility and drug response across patient populations, and it
points to the need to genetically stratify patients for clinical pharmacogenomic
studies. We are uncertain as to the overall direction of pharmacogenomics
over the next 10 years. Although new analytical systems introduced during the
last decade have offered incremental improvements over previously available
technology, they have not allowed scientists to maximize the benefit of multiple
advancements in genomics, combinatorial chemistry, and assay technologies. The
realization of an individualized approach to drug discovery and therapy will
require new statistical methods and analytical systems providing an
order-of-magnitude increase in throughput, along with corresponding decreases in
operating costs, with enhanced accuracy and reduced complexity. In addition to the daunting scientific challenges we have
outlined, ethical issues need to be resolved. Information about an individual's
genetic makeup raises privacy questions and ethical dilemmas about disease
susceptibility, prognosis, and treatment options. Obviously, information of this
type must be carefully safeguarded to ensure privacy. Many legal and economic
issues will need to be resolved. Whether or not these new genomic technologies find their way
into everyday clinical use during the next 10 years, they will prove valuable
tools in clinical research directed at optimizing drug therapy. The vision of
pharmacogenomics is leading us to a more individualized approach to drug
therapy, while revealing limits inherent to the treatment of disease in broad
patient populations.  |
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